↵
GH5_1 GH GH family — see CAZy reference
111
target proteins
110
CGCs
all
tree leaves
55
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_1 | GH | 111 | — | — |
| GH9 | GH | 23 | — | — |
| GH6 | GH | 9 | — | — |
| GT2 | GT | 9 | — | — |
| GH48 | GH | 6 | — | — |
| AA10 | AA | 6 | — | — |
| GH8 | GH | 5 | — | — |
| GH1 | GH | 4 | — | — |
| GH141 | GH | 4 | — | — |
| GH5_7 | GH | 3 | — | — |
| GH87 | GH | 3 | — | — |
| CBM6 | CBM | 3 | — | — |
| CBM3 | CBM | 2 | — | — |
| GH5_17 | GH | 2 | — | — |
| GH10 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_1_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh5_1_phylogeny.nwk |
| MUSCLE alignment | gh5_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |