↵
PL36_1 PL PL family — see CAZy reference
4
target proteins
4
CGCs
all
tree leaves
9
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl36_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL36_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL36_1 | PL | 4 | — | — |
| S1_13 | S1 | 2 | — | — |
| S1_2 | S1 | 1 | — | — |
| S1_27 | S1 | 1 | — | — |
| PL15_2 | PL | 1 | — | — |
| S1_9 | S1 | 1 | — | — |
| PL12_2 | PL | 1 | — | — |
| GH88 | GH | 1 | — | — |
| S1_29 | S1 | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL36_1_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl36_1_phylogeny.nwk |
| MUSCLE alignment | pl36_1_phylogeny.aln.faa |
| Target proteins (FASTA) | pl36_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |