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S1_13 S1 S1 family — see CAZy reference
148
target proteins
143
CGCs
all
tree leaves
104
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_13_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_13 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_13 | S1 | 148 | — | — |
| GT2 | GT | 17 | — | — |
| GH3 | GH | 12 | — | — |
| GT4 | GT | 12 | — | — |
| GT83 | GT | 7 | — | — |
| GH23 | GH | 7 | — | — |
| S1_11 | S1 | 4 | — | — |
| GT119 | GT | 4 | — | — |
| AA3_2 | AA | 4 | — | — |
| GH73 | GH | 4 | — | — |
| GT30 | GT | 4 | — | — |
| GH29 | GH | 3 | — | — |
| S1_16 | S1 | 3 | — | — |
| GH88 | GH | 3 | — | — |
| GT28 | GT | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_13_SSN.cys · 0.2 MB |
|---|---|
| Newick | s1_13_phylogeny.nwk |
| MUSCLE alignment | s1_13_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_13_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |