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GH73 GH GH family — see CAZy reference
2,229
target proteins
2,215
CGCs
999 / 2,229
tree leaves
85
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh73_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH73 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH73 | GH | 2,229 | — | — |
| GT2 | GT | 93 | — | — |
| GT4 | GT | 58 | — | — |
| GT26 | GT | 43 | — | — |
| GT119 | GT | 22 | — | — |
| GH1 | GH | 16 | — | — |
| S1_2 | S1 | 14 | — | — |
| GH13_19 | GH | 13 | — | — |
| GH23 | GH | 12 | — | — |
| GH3 | GH | 11 | — | — |
| GT28 | GT | 11 | — | — |
| S1_14 | S1 | 9 | — | — |
| S1_15 | S1 | 9 | — | — |
| S1_25 | S1 | 8 | — | — |
| S1_8 | S1 | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | GH73_SSN.cys · 138.6 MB |
|---|---|
| Newick | gh73_phylogeny.max999.nwk |
| MUSCLE alignment | gh73_phylogeny.aln.faa |
| Target proteins (FASTA) | gh73_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |