↵
Cyanobacteria PHYLUM
GTDB lineage: d__Bacteria;p__Cyanobacteria
13,244
CGCs
722
host MAGs
204
Distinct CAZyme and Sulfatase subfamilies
Overview
| GTDB rank | phylum |
|---|---|
| GTDB lineage | d__Bacteria;p__Cyanobacteria |
| Host MAGs (with ≥1 CGC) | 722 of 22,607 |
| CGCs in this group | 13,244 |
| Distinct CAZyme and Sulfatase subfamilies | 204 |
Sequence Similarity Network
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys. The bundled global x/y layout, node categories, and edge bitscores/e-values are all preloaded as attributes.
SCoNe co-occurrence
Top subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT2 | GT | 4,064 | — | — |
| GT4 | GT | 3,861 | — | — |
| GT119 | GT | 976 | — | — |
| GT19 | GT | 721 | — | — |
| GT51 | GT | 464 | — | — |
| GT83 | GT | 457 | — | — |
| GH13_11 | GH | 421 | — | — |
| GT35 | GT | 412 | — | — |
| GH100 | GH | 402 | — | — |
| CE11 | CE | 399 | — | — |
| GT26 | GT | 394 | — | — |
| GT28 | GT | 380 | — | — |
| GH13_9 | GH | 352 | — | — |
| S1_37 | S1 | 331 | — | — |
| GH57_5 | GH | 305 | — | — |
Downloads
| Full SSN (Cytoscape) | Cyanobacteria_SSN.cys · 304.5 MB |
|---|---|
| CGC list | cgcs.txt · 13,244 IDs |
| MAG list | mags.txt · 722 IDs |
| Ranked families | ranked_families.tsv · 204 families |