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GH100 GH GH family — see CAZy reference
551
target proteins
546
CGCs
999 / 551
tree leaves
43
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh100_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH100 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH100 | GH | 551 | — | — |
| GT4 | GT | 27 | — | — |
| S1_27 | S1 | 17 | — | — |
| GH37 | GH | 13 | — | — |
| GH97 | GH | 6 | — | — |
| GH13_16 | GH | 6 | — | — |
| GH65 | GH | 4 | — | — |
| GH13_10 | GH | 3 | — | — |
| GH77 | GH | 3 | — | — |
| GH13_11 | GH | 3 | — | — |
| S1_15 | S1 | 3 | — | — |
| S1_2 | S1 | 2 | — | — |
| GT5 | GT | 2 | — | — |
| GH13_9 | GH | 2 | — | — |
| GH13_3 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH100_SSN.cys · 15.2 MB |
|---|---|
| Newick | gh100_phylogeny.max999.nwk |
| MUSCLE alignment | gh100_phylogeny.aln.faa |
| Target proteins (FASTA) | gh100_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |