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GH102 GH GH family — see CAZy reference
1,219
target proteins
1,219
CGCs
999 / 1,219
tree leaves
44
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh102_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH102 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH102 | GH | 1,219 | — | — |
| AA2 | AA | 16 | — | — |
| GH103 | GH | 12 | — | — |
| GT2 | GT | 11 | — | — |
| S1_6 | S1 | 10 | — | — |
| GT9 | GT | 9 | — | — |
| S1_27 | S1 | 7 | — | — |
| S1_2 | S1 | 7 | — | — |
| S1_64 | S1 | 5 | — | — |
| GT4 | GT | 5 | — | — |
| AA3_2 | AA | 4 | — | — |
| GT119 | GT | 4 | — | — |
| GT30 | GT | 3 | — | — |
| S1_15 | S1 | 3 | — | — |
| GH57_6 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH102_SSN.cys · 25.7 MB |
|---|---|
| Newick | gh102_phylogeny.max999.nwk |
| MUSCLE alignment | gh102_phylogeny.aln.faa |
| Target proteins (FASTA) | gh102_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |