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GH103 GH GH family — see CAZy reference
5,980
target proteins
5,964
CGCs
999 / 5,980
tree leaves
97
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh103_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH103 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH103 | GH | 5,980 | — | — |
| GT119 | GT | 1,674 | — | — |
| S1_6 | S1 | 121 | — | — |
| S1_2 | S1 | 78 | — | — |
| GT51 | GT | 70 | — | — |
| GT4 | GT | 59 | — | — |
| GH25 | GH | 44 | — | — |
| S1_4 | S1 | 36 | — | — |
| S1_8 | S1 | 36 | — | — |
| GT2 | GT | 33 | — | — |
| GH23 | GH | 33 | — | — |
| GT26 | GT | 19 | — | — |
| S1_97 | S1 | 17 | — | — |
| GH102 | GH | 12 | — | — |
| S1_22 | S1 | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH103_SSN.cys · 458.0 MB |
|---|---|
| Newick | gh103_phylogeny.max999.nwk |
| MUSCLE alignment | gh103_phylogeny.aln.faa |
| Target proteins (FASTA) | gh103_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |