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S1_22 S1 S1 family — see CAZy reference
866
target proteins
856
CGCs
999 / 866
tree leaves
292
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_22_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_22 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_22 | S1 | 866 | — | — |
| GH43_26 | GH | 85 | — | — |
| GH5_13 | GH | 71 | — | — |
| GH92 | GH | 68 | — | — |
| GH29 | GH | 62 | — | — |
| GT2 | GT | 60 | — | — |
| GH2_18 | GH | 57 | — | — |
| GH3 | GH | 47 | — | — |
| S1_4 | S1 | 39 | — | — |
| GT4 | GT | 38 | — | — |
| S1_16 | S1 | 37 | — | — |
| S1_7 | S1 | 36 | — | — |
| S1_15 | S1 | 36 | — | — |
| CE20 | CE | 35 | — | — |
| GH97 | GH | 33 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_22_SSN.cys · 6.9 MB |
|---|---|
| Newick | s1_22_phylogeny.max999.nwk |
| MUSCLE alignment | s1_22_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_22_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |