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GH128 GH GH family — see CAZy reference
156
target proteins
151
CGCs
all
tree leaves
76
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh128_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH128 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH128 | GH | 156 | — | — |
| S1_7 | S1 | 34 | — | — |
| S1_16 | S1 | 28 | — | — |
| S1_19 | S1 | 26 | — | — |
| GH16_3 | GH | 21 | — | — |
| S1_15 | S1 | 18 | — | — |
| GH136 | GH | 17 | — | — |
| S1_36 | S1 | 17 | — | — |
| GH3 | GH | 11 | — | — |
| GH26 | GH | 10 | — | — |
| GT2 | GT | 10 | — | — |
| GH5_46 | GH | 10 | — | — |
| GH43_24 | GH | 9 | — | — |
| S1_20 | S1 | 9 | — | — |
| GH2_10 | GH | 9 | — | — |
Downloads
| Full SSN (Cytoscape) | GH128_SSN.cys · 0.4 MB |
|---|---|
| Newick | gh128_phylogeny.nwk |
| MUSCLE alignment | gh128_phylogeny.aln.faa |
| Target proteins (FASTA) | gh128_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |