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GH178 GH GH family — see CAZy reference
461
target proteins
461
CGCs
999 / 461
tree leaves
26
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh178_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH178 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH178 | GH | 461 | — | — |
| GT4 | GT | 390 | — | — |
| GT30 | GT | 52 | — | — |
| S1_8 | S1 | 11 | — | — |
| GT2 | GT | 9 | — | — |
| GT51 | GT | 8 | — | — |
| GH1 | GH | 7 | — | — |
| GT9 | GT | 7 | — | — |
| GT87 | GT | 5 | — | — |
| S1_4 | S1 | 5 | — | — |
| S1_2 | S1 | 4 | — | — |
| S1_16 | S1 | 4 | — | — |
| GH10 | GH | 2 | — | — |
| S1_7 | S1 | 2 | — | — |
| CE4 | CE | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH178_SSN.cys · 13.7 MB |
|---|---|
| Newick | gh178_phylogeny.max999.nwk |
| MUSCLE alignment | gh178_phylogeny.aln.faa |
| Target proteins (FASTA) | gh178_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |