↵
GH43_32 GH GH family — see CAZy reference
42
target proteins
41
CGCs
all
tree leaves
35
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_32_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_32 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_32 | GH | 42 | — | — |
| GH2_19 | GH | 11 | — | — |
| GH1 | GH | 7 | — | — |
| GH43_26 | GH | 7 | — | — |
| S1_4 | S1 | 4 | — | — |
| GH43_30 | GH | 4 | — | — |
| GH5_13 | GH | 3 | — | — |
| GH43_3 | GH | 3 | — | — |
| GH54 | GH | 2 | — | — |
| GH172 | GH | 2 | — | — |
| S1_16 | S1 | 2 | — | — |
| GH30 | GH | 2 | — | — |
| CE9 | CE | 1 | — | — |
| GH13_18 | GH | 1 | — | — |
| GT35 | GT | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_32_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh43_32_phylogeny.nwk |
| MUSCLE alignment | gh43_32_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_32_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |