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GH30 GH GH family — see CAZy reference
98
target proteins
1,686
CGCs
999 / 98
tree leaves
283
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh30_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH30 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH30_1 | GH | 1,060 | — | — |
| GH17 | GH | 1,000 | — | — |
| GH16_3 | GH | 523 | — | — |
| GH149 | GH | 499 | — | — |
| GH30_3 | GH | 340 | — | — |
| GH3 | GH | 327 | — | — |
| CBM102 | CBM | 226 | — | — |
| S1_56 | S1 | 198 | — | — |
| GH30_4 | GH | 168 | — | — |
| S1_8 | S1 | 136 | — | — |
| GH5_46 | GH | 131 | — | — |
| GH30 | GH | 98 | — | — |
| GH1 | GH | 96 | — | — |
| S1_15 | S1 | 81 | — | — |
| GH30_2 | GH | 79 | — | — |
Downloads
| Full SSN (Cytoscape) | GH30_SSN.cys · 65.8 MB |
|---|---|
| Newick | gh30_phylogeny.max999.nwk |
| MUSCLE alignment | gh30_phylogeny.aln.faa |
| Target proteins (FASTA) | gh30_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |