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PL10_3 PL PL family — see CAZy reference
126
target proteins
126
CGCs
all
tree leaves
39
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl10_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL10_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL10_3 | PL | 126 | — | — |
| S1_8 | S1 | 7 | — | — |
| S1_7 | S1 | 7 | — | — |
| S1_16 | S1 | 4 | — | — |
| S1_17 | S1 | 3 | — | — |
| GT2 | GT | 3 | — | — |
| S1_23 | S1 | 3 | — | — |
| S1_15 | S1 | 3 | — | — |
| S1_11 | S1 | 2 | — | — |
| GH43_2 | GH | 2 | — | — |
| S1_71 | S1 | 2 | — | — |
| S1_14 | S1 | 2 | — | — |
| CE19 | CE | 2 | — | — |
| S1_26 | S1 | 2 | — | — |
| S1_52 | S1 | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | PL10_3_SSN.cys · 0.3 MB |
|---|---|
| Newick | pl10_3_phylogeny.nwk |
| MUSCLE alignment | pl10_3_phylogeny.aln.faa |
| Target proteins (FASTA) | pl10_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |