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CE19 CE CE family — see CAZy reference
616
target proteins
611
CGCs
999 / 616
tree leaves
119
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce19_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE19 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE19 | CE | 616 | — | — |
| S1_8 | S1 | 53 | — | — |
| PL1_2 | PL | 48 | — | — |
| GH78 | GH | 46 | — | — |
| S1_16 | S1 | 38 | — | — |
| S1_7 | S1 | 35 | — | — |
| GH33 | GH | 30 | — | — |
| GH43_18 | GH | 23 | — | — |
| GH28 | GH | 23 | — | — |
| CE20 | CE | 23 | — | — |
| GH140 | GH | 20 | — | — |
| S1_17 | S1 | 19 | — | — |
| GH95 | GH | 18 | — | — |
| GH143 | GH | 18 | — | — |
| S1_14 | S1 | 18 | — | — |
Downloads
| Full SSN (Cytoscape) | CE19_SSN.cys · 4.2 MB |
|---|---|
| Newick | ce19_phylogeny.max999.nwk |
| MUSCLE alignment | ce19_phylogeny.aln.faa |
| Target proteins (FASTA) | ce19_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |