↵
S1_72 S1 S1 family — see CAZy reference
32
target proteins
30
CGCs
all
tree leaves
46
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_72_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_72 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_72 | S1 | 32 | — | — |
| GH117 | GH | 17 | — | — |
| GH29 | GH | 13 | — | — |
| GH16_11 | GH | 12 | — | — |
| GH2_1 | GH | 10 | — | — |
| GH28 | GH | 8 | — | — |
| GH86 | GH | 7 | — | — |
| S1_8 | S1 | 7 | — | — |
| S1_28 | S1 | 6 | — | — |
| GH3 | GH | 6 | — | — |
| GH2_7 | GH | 6 | — | — |
| S1_17 | S1 | 5 | — | — |
| S1_19 | S1 | 3 | — | — |
| GH2_6 | GH | 3 | — | — |
| GH74 | GH | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_72_SSN.cys · 0.0 MB |
|---|---|
| Newick | s1_72_phylogeny.nwk |
| MUSCLE alignment | s1_72_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_72_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |