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Verrucomicrobiota PHYLUM
GTDB lineage: d__Bacteria;p__Verrucomicrobiota
7,300
CGCs
589
host MAGs
405
Distinct CAZyme and Sulfatase subfamilies
Overview
| GTDB rank | phylum |
|---|---|
| GTDB lineage | d__Bacteria;p__Verrucomicrobiota |
| Host MAGs (with ≥1 CGC) | 589 of 22,607 |
| CGCs in this group | 7,300 |
| Distinct CAZyme and Sulfatase subfamilies | 405 |
Sequence Similarity Network
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys. The bundled global x/y layout, node categories, and edge bitscores/e-values are all preloaded as attributes.
SCoNe co-occurrence
Top subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT4 | GT | 788 | — | — |
| GT2 | GT | 750 | — | — |
| GT119 | GT | 474 | — | — |
| S1_7 | S1 | 390 | — | — |
| S1_8 | S1 | 319 | — | — |
| CE20 | CE | 310 | — | — |
| GH177 | GH | 309 | — | — |
| GT28 | GT | 296 | — | — |
| S1_16 | S1 | 269 | — | — |
| GH33 | GH | 266 | — | — |
| S1_15 | S1 | 198 | — | — |
| GT19 | GT | 192 | — | — |
| GT30 | GT | 176 | — | — |
| CE11 | CE | 172 | — | — |
| GT5 | GT | 166 | — | — |
Downloads
| Full SSN (Cytoscape) | Verrucomicrobiota_SSN.cys · 42.9 MB |
|---|---|
| CGC list | cgcs.txt · 7,300 IDs |
| MAG list | mags.txt · 589 IDs |
| Ranked families | ranked_families.tsv · 405 families |