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GH108 GH GH family — see CAZy reference
656
target proteins
656
CGCs
999 / 656
tree leaves
20
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh108_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH108 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH108 | GH | 656 | — | — |
| S1_8 | S1 | 15 | — | — |
| GH3 | GH | 11 | — | — |
| S1_2 | S1 | 9 | — | — |
| GT4 | GT | 6 | — | — |
| GT20 | GT | 4 | — | — |
| S1_24 | S1 | 2 | — | — |
| GH103 | GH | 2 | — | — |
| GT2 | GT | 2 | — | — |
| GH18 | GH | 2 | — | — |
| S1_15 | S1 | 2 | — | — |
| GT51 | GT | 2 | — | — |
| S1_4 | S1 | 1 | — | — |
| S1_29 | S1 | 1 | — | — |
| GH15 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH108_SSN.cys · 28.1 MB |
|---|---|
| Newick | gh108_phylogeny.max999.nwk |
| MUSCLE alignment | gh108_phylogeny.aln.faa |
| Target proteins (FASTA) | gh108_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |