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GH123_4 GH GH family — see CAZy reference
20
target proteins
20
CGCs
all
tree leaves
13
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh123_4_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH123_4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT4 | GT | 21 | — | — |
| GH123_4 | GH | 20 | — | — |
| S1_8 | S1 | 3 | — | — |
| S1_16 | S1 | 2 | — | — |
| GH95 | GH | 1 | — | — |
| GT121 | GT | 1 | — | — |
| GT2 | GT | 1 | — | — |
| PL1_2 | PL | 1 | — | — |
| GH141 | GH | 1 | — | — |
| GH109 | GH | 1 | — | — |
| S1_14 | S1 | 1 | — | — |
| GH29 | GH | 1 | — | — |
| S1_52 | S1 | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH123_4_SSN.cys · 0.0 MB |
|---|---|
| Newick | gh123_4_phylogeny.nwk |
| MUSCLE alignment | gh123_4_phylogeny.aln.faa |
| Target proteins (FASTA) | gh123_4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |