↵
GH13_39 GH GH family — see CAZy reference
72
target proteins
72
CGCs
all
tree leaves
31
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_39_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_39 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_39 | GH | 72 | — | — |
| GT35 | GT | 32 | — | — |
| GT5 | GT | 30 | — | — |
| GH13_9 | GH | 25 | — | — |
| GH13_31 | GH | 3 | — | — |
| S1_5 | S1 | 3 | — | — |
| GH77 | GH | 3 | — | — |
| GH130_6 | GH | 2 | — | — |
| S1_2 | S1 | 2 | — | — |
| GH4 | GH | 2 | — | — |
| S1_4 | S1 | 2 | — | — |
| GH13_48 | GH | 2 | — | — |
| GH13_36 | GH | 2 | — | — |
| GH13_23 | GH | 2 | — | — |
| GH13_20 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_39_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh13_39_phylogeny.nwk |
| MUSCLE alignment | gh13_39_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_39_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |