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GH55_1 GH GH family — see CAZy reference
113
target proteins
113
CGCs
all
tree leaves
74
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh55_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH55_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH55_1 | GH | 113 | — | — |
| GH1 | GH | 21 | — | — |
| GH3 | GH | 11 | — | — |
| GH16_3 | GH | 9 | — | — |
| GH158 | GH | 7 | — | — |
| GH43_26 | GH | 7 | — | — |
| CBM13 | CBM | 5 | — | — |
| CE14 | CE | 4 | — | — |
| GH87 | GH | 4 | — | — |
| AA10 | AA | 4 | — | — |
| GH43_5 | GH | 4 | — | — |
| GH74 | GH | 4 | — | — |
| GH51_1 | GH | 3 | — | — |
| GH97 | GH | 3 | — | — |
| S1_4 | S1 | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH55_1_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh55_1_phylogeny.nwk |
| MUSCLE alignment | gh55_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh55_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |