↵
PL25 PL PL family — see CAZy reference
37
target proteins
35
CGCs
all
tree leaves
46
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl25_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL25 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL25 | PL | 37 | — | — |
| GH78 | GH | 22 | — | — |
| S1_7 | S1 | 16 | — | — |
| GH105 | GH | 10 | — | — |
| S1_8 | S1 | 10 | — | — |
| S1_21 | S1 | 10 | — | — |
| GH106 | GH | 9 | — | — |
| S1_20 | S1 | 8 | — | — |
| S1_27 | S1 | 6 | — | — |
| S1_16 | S1 | 5 | — | — |
| GH3 | GH | 5 | — | — |
| PL24 | PL | 5 | — | — |
| GH2_1 | GH | 4 | — | — |
| PL40 | PL | 4 | — | — |
| PL42 | PL | 4 | — | — |
Downloads
| Full SSN (Cytoscape) | PL25_SSN.cys · 0.1 MB |
|---|---|
| Newick | pl25_phylogeny.nwk |
| MUSCLE alignment | pl25_phylogeny.aln.faa |
| Target proteins (FASTA) | pl25_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |