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PL28 PL PL family — see CAZy reference
22
target proteins
19
CGCs
all
tree leaves
35
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl28_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL28 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH78 | GH | 34 | — | — |
| GH106 | GH | 24 | — | — |
| PL28 | PL | 22 | — | — |
| GH3 | GH | 16 | — | — |
| S1_8 | S1 | 14 | — | — |
| GH105 | GH | 12 | — | — |
| GH43_29 | GH | 10 | — | — |
| PL37 | PL | 10 | — | — |
| S1_16 | S1 | 8 | — | — |
| PL24 | PL | 8 | — | — |
| S1_7 | S1 | 6 | — | — |
| CBM67 | CBM | 6 | — | — |
| PL38 | PL | 5 | — | — |
| PL40 | PL | 5 | — | — |
| GH2_2 | GH | 4 | — | — |
Downloads
| Full SSN (Cytoscape) | PL28_SSN.cys · 0.1 MB |
|---|---|
| Newick | pl28_phylogeny.nwk |
| MUSCLE alignment | pl28_phylogeny.aln.faa |
| Target proteins (FASTA) | pl28_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |