↵
PL31 PL PL family — see CAZy reference
49
target proteins
48
CGCs
all
tree leaves
29
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl31_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL31 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL31 | PL | 49 | — | — |
| GH88 | GH | 4 | — | — |
| GT2 | GT | 4 | — | — |
| GH5_2 | GH | 4 | — | — |
| GH2_2 | GH | 3 | — | — |
| GH6 | GH | 3 | — | — |
| PL14_3 | PL | 2 | — | — |
| PL38 | PL | 1 | — | — |
| CE20 | CE | 1 | — | — |
| GH65 | GH | 1 | — | — |
| CE4 | CE | 1 | — | — |
| GH3 | GH | 1 | — | — |
| S1_22 | S1 | 1 | — | — |
| GH5_13 | GH | 1 | — | — |
| S1_14 | S1 | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL31_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl31_phylogeny.nwk |
| MUSCLE alignment | pl31_phylogeny.aln.faa |
| Target proteins (FASTA) | pl31_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |