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S1_43 S1 S1 family — see CAZy reference
11
target proteins
10
CGCs
all
tree leaves
17
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_43_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_43 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_43 | S1 | 11 | — | — |
| GH88 | GH | 2 | — | — |
| GH4 | GH | 2 | — | — |
| GH112 | GH | 1 | — | — |
| GH154 | GH | 1 | — | — |
| PL29 | PL | 1 | — | — |
| S1_27 | S1 | 1 | — | — |
| S1_2 | S1 | 1 | — | — |
| GH36 | GH | 1 | — | — |
| S1_37 | S1 | 1 | — | — |
| GH2_10 | GH | 1 | — | — |
| GH106 | GH | 1 | — | — |
| GH10 | GH | 1 | — | — |
| GH140 | GH | 1 | — | — |
| S1_20 | S1 | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_43_SSN.cys · 0.0 MB |
|---|---|
| Newick | s1_43_phylogeny.nwk |
| MUSCLE alignment | s1_43_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_43_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |