↵
Proteobacteria PHYLUM
GTDB lineage: d__Bacteria;p__Proteobacteria
113,137
CGCs
9,349
host MAGs
617
Distinct CAZyme and Sulfatase subfamilies
Overview
| GTDB rank | phylum |
|---|---|
| GTDB lineage | d__Bacteria;p__Proteobacteria |
| Host MAGs (with ≥1 CGC) | 9,349 of 22,607 |
| CGCs in this group | 113,137 |
| Distinct CAZyme and Sulfatase subfamilies | 617 |
Sequence Similarity Network
SSN
.cys
Open on Zenodo
.cys
Too large for a laptop. This file is hosted on Zenodo; we suggest drilling into a class-level page for a workable session, or downloading and opening on an HPC node.
SCoNe co-occurrence
Top subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT4 | GT | 17,633 | — | — |
| GT2 | GT | 15,069 | — | — |
| GT119 | GT | 10,453 | — | — |
| GH23 | GH | 8,205 | — | — |
| AA3_2 | AA | 7,247 | — | — |
| GT51 | GT | 6,252 | — | — |
| GT28 | GT | 5,776 | — | — |
| GH103 | GH | 5,770 | — | — |
| GH3 | GH | 5,675 | — | — |
| CE11 | CE | 5,187 | — | — |
| GT30 | GT | 3,903 | — | — |
| GT9 | GT | 3,713 | — | — |
| S1_6 | S1 | 3,167 | — | — |
| GH13_23 | GH | 1,868 | — | — |
| GH1 | GH | 1,636 | — | — |
Downloads
| Full SSN (Cytoscape, Zenodo) | Proteobacteria_SSN.cys · 8.24 GB · hosted externally |
|---|---|
| CGC list | cgcs.txt · 113,137 IDs |
| MAG list | mags.txt · 9,349 IDs |
| Ranked families | ranked_families.tsv · 617 families |