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GH123 GH GH family — see CAZy reference
12
target proteins
168
CGCs
all
tree leaves
94
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh123_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH123 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH123_3 | GH | 65 | — | — |
| GH123_1 | GH | 49 | — | — |
| GH20 | GH | 39 | — | — |
| GH123_2 | GH | 29 | — | — |
| GH92 | GH | 24 | — | — |
| GT4 | GT | 22 | — | — |
| GH123_4 | GH | 20 | — | — |
| GH29 | GH | 19 | — | — |
| S1_8 | S1 | 16 | — | — |
| S1_16 | S1 | 15 | — | — |
| GH2_10 | GH | 14 | — | — |
| GH123 | GH | 12 | — | — |
| S1_11 | S1 | 9 | — | — |
| GH109 | GH | 9 | — | — |
| GH27 | GH | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | GH123_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh123_phylogeny.nwk |
| MUSCLE alignment | gh123_phylogeny.aln.faa |
| Target proteins (FASTA) | gh123_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |