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GH123_3 GH GH family — see CAZy reference
65
target proteins
63
CGCs
all
tree leaves
27
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh123_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH123_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH123_3 | GH | 65 | — | — |
| S1_16 | S1 | 6 | — | — |
| S1_7 | S1 | 5 | — | — |
| S1_8 | S1 | 5 | — | — |
| S1_71 | S1 | 3 | — | — |
| GH20 | GH | 2 | — | — |
| GH116 | GH | 1 | — | — |
| S1_44 | S1 | 1 | — | — |
| S1_15 | S1 | 1 | — | — |
| PL33_2 | PL | 1 | — | — |
| CBM9 | CBM | 1 | — | — |
| GH78 | GH | 1 | — | — |
| GH172 | GH | 1 | — | — |
| GT35 | GT | 1 | — | — |
| GH38 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH123_3_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh123_3_phylogeny.nwk |
| MUSCLE alignment | gh123_3_phylogeny.aln.faa |
| Target proteins (FASTA) | gh123_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |