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GH13_29 GH GH family — see CAZy reference
373
target proteins
373
CGCs
all
tree leaves
43
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_29_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_29 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_29 | GH | 373 | — | — |
| GH13_31 | GH | 9 | — | — |
| GH23 | GH | 9 | — | — |
| S1_97 | S1 | 8 | — | — |
| S1_8 | S1 | 7 | — | — |
| GH3 | GH | 6 | — | — |
| AA10 | AA | 4 | — | — |
| GH20 | GH | 4 | — | — |
| GH1 | GH | 4 | — | — |
| GH4 | GH | 3 | — | — |
| GH38 | GH | 3 | — | — |
| S1_7 | S1 | 2 | — | — |
| GH36 | GH | 2 | — | — |
| GH13_18 | GH | 2 | — | — |
| GH63 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_29_SSN.cys · 7.7 MB |
|---|---|
| Newick | gh13_29_phylogeny.nwk |
| MUSCLE alignment | gh13_29_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_29_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |