↵
GH16_5 GH GH family — see CAZy reference
88
target proteins
86
CGCs
all
tree leaves
20
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh16_5_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH16_5 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH16_5 | GH | 88 | — | — |
| GT2 | GT | 27 | — | — |
| GH13_11 | GH | 10 | — | — |
| GT4 | GT | 9 | — | — |
| GH13_9 | GH | 8 | — | — |
| GT35 | GT | 7 | — | — |
| GT5 | GT | 6 | — | — |
| GT26 | GT | 6 | — | — |
| S1_37 | S1 | 2 | — | — |
| GH30_3 | GH | 1 | — | — |
| GH30_1 | GH | 1 | — | — |
| S1_7 | S1 | 1 | — | — |
| GH1 | GH | 1 | — | — |
| GH13_23 | GH | 1 | — | — |
| PL15_1 | PL | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH16_5_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh16_5_phylogeny.nwk |
| MUSCLE alignment | gh16_5_phylogeny.aln.faa |
| Target proteins (FASTA) | gh16_5_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |