↵
GH2 GH GH family — see CAZy reference
144
target proteins
5,815
CGCs
999 / 144
tree leaves
457
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_10 | GH | 1,501 | — | — |
| GH2_13 | GH | 1,070 | — | — |
| GH2_1 | GH | 718 | — | — |
| GH92 | GH | 493 | — | — |
| GH2_18 | GH | 432 | — | — |
| GH2_19 | GH | 416 | — | — |
| GH3 | GH | 399 | — | — |
| GH20 | GH | 369 | — | — |
| S1_8 | S1 | 324 | — | — |
| GH29 | GH | 307 | — | — |
| GH2_4 | GH | 288 | — | — |
| GH2_2 | GH | 281 | — | — |
| S1_7 | S1 | 243 | — | — |
| S1_16 | S1 | 241 | — | — |
| GH2_15 | GH | 223 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_SSN.cys · 172.9 MB |
|---|---|
| Newick | gh2_phylogeny.max999.nwk |
| MUSCLE alignment | gh2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |