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GH2_15 GH GH family — see CAZy reference
223
target proteins
223
CGCs
all
tree leaves
47
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_15_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_15 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_15 | GH | 223 | — | — |
| GT2 | GT | 22 | — | — |
| GH9 | GH | 9 | — | — |
| GH141 | GH | 8 | — | — |
| GH94 | GH | 5 | — | — |
| GH97 | GH | 5 | — | — |
| GH139 | GH | 5 | — | — |
| GH95 | GH | 5 | — | — |
| S1_16 | S1 | 4 | — | — |
| GH29 | GH | 3 | — | — |
| GH35 | GH | 2 | — | — |
| GH144 | GH | 2 | — | — |
| S1_6 | S1 | 2 | — | — |
| GH2_10 | GH | 2 | — | — |
| S1_4 | S1 | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_15_SSN.cys · 1.4 MB |
|---|---|
| Newick | gh2_15_phylogeny.nwk |
| MUSCLE alignment | gh2_15_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_15_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |