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GH2_8 GH GH family — see CAZy reference
21
target proteins
21
CGCs
all
tree leaves
34
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_8_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_8 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL1_2 | PL | 37 | — | — |
| GH78 | GH | 35 | — | — |
| GH2_8 | GH | 21 | — | — |
| GH28 | GH | 19 | — | — |
| GH142 | GH | 18 | — | — |
| GH95 | GH | 18 | — | — |
| GH138 | GH | 17 | — | — |
| GH33 | GH | 16 | — | — |
| CE19 | CE | 15 | — | — |
| GH2_1 | GH | 14 | — | — |
| GH43_18 | GH | 14 | — | — |
| GH140 | GH | 14 | — | — |
| GH143 | GH | 13 | — | — |
| GH127 | GH | 13 | — | — |
| GH139 | GH | 12 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_8_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh2_8_phylogeny.nwk |
| MUSCLE alignment | gh2_8_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_8_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |