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GH43_16 GH GH family — see CAZy reference
37
target proteins
37
CGCs
all
tree leaves
35
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_16_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_16 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_16 | GH | 37 | — | — |
| GH30_8 | GH | 16 | — | — |
| GH43_10 | GH | 12 | — | — |
| GH4 | GH | 7 | — | — |
| GH5_4 | GH | 6 | — | — |
| GH5_2 | GH | 4 | — | — |
| GH10 | GH | 2 | — | — |
| CE6 | CE | 2 | — | — |
| CBM6 | CBM | 2 | — | — |
| GH29 | GH | 2 | — | — |
| GH141 | GH | 2 | — | — |
| GH43_12 | GH | 2 | — | — |
| CBM13 | CBM | 2 | — | — |
| GH97 | GH | 1 | — | — |
| GH31_3 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_16_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh43_16_phylogeny.nwk |
| MUSCLE alignment | gh43_16_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_16_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |