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GH5_28 GH GH family — see CAZy reference
59
target proteins
59
CGCs
all
tree leaves
27
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_28_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_28 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_28 | GH | 59 | — | — |
| S1_8 | S1 | 4 | — | — |
| GH1 | GH | 3 | — | — |
| GH29 | GH | 2 | — | — |
| S1_6 | S1 | 2 | — | — |
| GH112 | GH | 1 | — | — |
| GH101 | GH | 1 | — | — |
| GH20 | GH | 1 | — | — |
| S1_11 | S1 | 1 | — | — |
| GH2_10 | GH | 1 | — | — |
| GH123_2 | GH | 1 | — | — |
| S1_26 | S1 | 1 | — | — |
| GH42 | GH | 1 | — | — |
| S1_46 | S1 | 1 | — | — |
| GH35 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_28_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh5_28_phylogeny.nwk |
| MUSCLE alignment | gh5_28_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_28_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |