↵
S1_46 S1 S1 family — see CAZy reference
193
target proteins
190
CGCs
all
tree leaves
138
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_46_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_46 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_46 | S1 | 193 | — | — |
| GT4 | GT | 12 | — | — |
| GT2 | GT | 11 | — | — |
| GH109 | GH | 10 | — | — |
| GH20 | GH | 10 | — | — |
| GT35 | GT | 9 | — | — |
| GH13_9 | GH | 9 | — | — |
| GT5 | GT | 9 | — | — |
| GH78 | GH | 8 | — | — |
| GH13_11 | GH | 8 | — | — |
| GH103 | GH | 7 | — | — |
| GH29 | GH | 7 | — | — |
| S1_16 | S1 | 7 | — | — |
| GH106 | GH | 7 | — | — |
| GH63 | GH | 6 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_46_SSN.cys · 0.3 MB |
|---|---|
| Newick | s1_46_phylogeny.nwk |
| MUSCLE alignment | s1_46_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_46_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |