↵
GH64 GH GH family — see CAZy reference
108
target proteins
107
CGCs
all
tree leaves
63
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh64_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH64 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH64 | GH | 108 | — | — |
| GH16_3 | GH | 34 | — | — |
| GH18 | GH | 13 | — | — |
| GH101 | GH | 10 | — | — |
| GH15 | GH | 7 | — | — |
| GT4 | GT | 7 | — | — |
| GH184 | GH | 7 | — | — |
| GH3 | GH | 7 | — | — |
| S1_2 | S1 | 6 | — | — |
| GH20 | GH | 6 | — | — |
| GH1 | GH | 5 | — | — |
| CBM6 | CBM | 5 | — | — |
| S1_9 | S1 | 5 | — | — |
| CBM102 | CBM | 4 | — | — |
| S1_7 | S1 | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH64_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh64_phylogeny.nwk |
| MUSCLE alignment | gh64_phylogeny.aln.faa |
| Target proteins (FASTA) | gh64_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |