↵
GH68_2 GH GH family — see CAZy reference
95
target proteins
91
CGCs
all
tree leaves
17
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh68_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH68_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH68_2 | GH | 95 | — | — |
| GH32 | GH | 19 | — | — |
| GH36 | GH | 8 | — | — |
| S1_8 | S1 | 4 | — | — |
| GT2 | GT | 2 | — | — |
| S1_6 | S1 | 2 | — | — |
| GH16_3 | GH | 1 | — | — |
| GH115 | GH | 1 | — | — |
| GH13_31 | GH | 1 | — | — |
| GH91 | GH | 1 | — | — |
| GH172 | GH | 1 | — | — |
| PL26 | PL | 1 | — | — |
| PL11_1 | PL | 1 | — | — |
| S1_7 | S1 | 1 | — | — |
| GH51_1 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH68_2_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh68_2_phylogeny.nwk |
| MUSCLE alignment | gh68_2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh68_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |