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PL35 PL PL family — see CAZy reference
155
target proteins
148
CGCs
all
tree leaves
68
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl35_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL35 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL35 | PL | 155 | — | — |
| PL42 | PL | 21 | — | — |
| PL33 | PL | 14 | — | — |
| S1_7 | S1 | 12 | — | — |
| S1_8 | S1 | 11 | — | — |
| GH105 | GH | 11 | — | — |
| PL8_3 | PL | 10 | — | — |
| GH88 | GH | 8 | — | — |
| PL33_1 | PL | 7 | — | — |
| S1_15 | S1 | 7 | — | — |
| PL38 | PL | 5 | — | — |
| GT20 | GT | 5 | — | — |
| PL12 | PL | 4 | — | — |
| S1_20 | S1 | 4 | — | — |
| GH78 | GH | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | PL35_SSN.cys · 0.4 MB |
|---|---|
| Newick | pl35_phylogeny.nwk |
| MUSCLE alignment | pl35_phylogeny.aln.faa |
| Target proteins (FASTA) | pl35_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |