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PL33 PL PL family — see CAZy reference
40
target proteins
176
CGCs
all
tree leaves
103
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl33_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL33 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL33_2 | PL | 73 | — | — |
| PL33_1 | PL | 68 | — | — |
| GH88 | GH | 58 | — | — |
| GH154 | GH | 42 | — | — |
| PL33 | PL | 40 | — | — |
| PL40 | PL | 32 | — | — |
| GH29 | GH | 27 | — | — |
| S1_8 | S1 | 23 | — | — |
| S1_7 | S1 | 22 | — | — |
| PL35 | PL | 22 | — | — |
| PL42 | PL | 18 | — | — |
| PL43 | PL | 16 | — | — |
| GH141 | GH | 14 | — | — |
| S1_11 | S1 | 13 | — | — |
| GH97 | GH | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | PL33_SSN.cys · 0.6 MB |
|---|---|
| Newick | pl33_phylogeny.nwk |
| MUSCLE alignment | pl33_phylogeny.aln.faa |
| Target proteins (FASTA) | pl33_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |