↵
PL5 PL PL family — see CAZy reference
73
target proteins
133
CGCs
all
tree leaves
20
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl5_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL5 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT2 | GT | 85 | — | — |
| PL5 | PL | 73 | — | — |
| PL5_1 | PL | 62 | — | — |
| PL14_3 | PL | 28 | — | — |
| S1_2 | S1 | 4 | — | — |
| PL38 | PL | 3 | — | — |
| PL7_1 | PL | 2 | — | — |
| GH20 | GH | 2 | — | — |
| S1_0 | S1 | 2 | — | — |
| S1_4 | S1 | 2 | — | — |
| GH166 | GH | 2 | — | — |
| S1_97 | S1 | 1 | — | — |
| S1_6 | S1 | 1 | — | — |
| GH109 | GH | 1 | — | — |
| GH31_18 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL5_SSN.cys · 0.8 MB |
|---|---|
| Newick | pl5_phylogeny.nwk |
| MUSCLE alignment | pl5_phylogeny.aln.faa |
| Target proteins (FASTA) | pl5_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |