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PL9_3 PL PL family — see CAZy reference
19
target proteins
18
CGCs
all
tree leaves
16
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl9_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL9_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL9_3 | PL | 19 | — | — |
| PL1_6 | PL | 7 | — | — |
| PL1 | PL | 7 | — | — |
| CE8 | CE | 7 | — | — |
| GH43_10 | GH | 4 | — | — |
| CE12 | CE | 4 | — | — |
| GH43_22 | GH | 3 | — | — |
| GH5_2 | GH | 2 | — | — |
| PL3_4 | PL | 2 | — | — |
| PL4_1 | PL | 1 | — | — |
| S1_5 | S1 | 1 | — | — |
| PL26 | PL | 1 | — | — |
| PL1_5 | PL | 1 | — | — |
| S1_2 | S1 | 1 | — | — |
| PL8 | PL | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL9_3_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl9_3_phylogeny.nwk |
| MUSCLE alignment | pl9_3_phylogeny.aln.faa |
| Target proteins (FASTA) | pl9_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |