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PL3_4 PL PL family — see CAZy reference
24
target proteins
24
CGCs
all
tree leaves
21
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl3_4_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL3_4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL3_4 | PL | 24 | — | — |
| GH43_10 | GH | 7 | — | — |
| CE12 | CE | 7 | — | — |
| PL1_6 | PL | 7 | — | — |
| CE8 | CE | 7 | — | — |
| PL1_9 | PL | 3 | — | — |
| GH43_22 | GH | 2 | — | — |
| CE1 | CE | 2 | — | — |
| PL11 | PL | 2 | — | — |
| GH13_3 | GH | 2 | — | — |
| GH13_16 | GH | 2 | — | — |
| GH13_9 | GH | 2 | — | — |
| GH12 | GH | 2 | — | — |
| PL9_3 | PL | 2 | — | — |
| GH16_3 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL3_4_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl3_4_phylogeny.nwk |
| MUSCLE alignment | pl3_4_phylogeny.aln.faa |
| Target proteins (FASTA) | pl3_4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |