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GH43_22 GH GH family — see CAZy reference
75
target proteins
67
CGCs
all
tree leaves
83
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_22_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_22 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_22 | GH | 75 | — | — |
| GH43_26 | GH | 12 | — | — |
| PL1_6 | PL | 9 | — | — |
| CE8 | CE | 8 | — | — |
| GH51_1 | GH | 8 | — | — |
| GH43_10 | GH | 6 | — | — |
| CE12 | CE | 6 | — | — |
| GH51_2 | GH | 6 | — | — |
| GH27 | GH | 5 | — | — |
| GH43_27 | GH | 5 | — | — |
| PL1 | PL | 5 | — | — |
| GH35 | GH | 5 | — | — |
| GH127 | GH | 4 | — | — |
| GH146 | GH | 4 | — | — |
| GH43_34 | GH | 4 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_22_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh43_22_phylogeny.nwk |
| MUSCLE alignment | gh43_22_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_22_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |