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S1_40 S1 S1 family — see CAZy reference
27
target proteins
27
CGCs
all
tree leaves
51
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_40_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_40 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_40 | S1 | 27 | — | — |
| GH16_3 | GH | 9 | — | — |
| S1_20 | S1 | 7 | — | — |
| S1_15 | S1 | 6 | — | — |
| GH3 | GH | 5 | — | — |
| GH172 | GH | 4 | — | — |
| GH109 | GH | 4 | — | — |
| GH2_20 | GH | 3 | — | — |
| GH29 | GH | 3 | — | — |
| S1_8 | S1 | 2 | — | — |
| GH167 | GH | 2 | — | — |
| GH2_2 | GH | 2 | — | — |
| GH43_29 | GH | 2 | — | — |
| GH65 | GH | 2 | — | — |
| GH2_1 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_40_SSN.cys · 0.0 MB |
|---|---|
| Newick | s1_40_phylogeny.nwk |
| MUSCLE alignment | s1_40_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_40_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |