↵
S1_55 S1 S1 family — see CAZy reference
30
target proteins
30
CGCs
all
tree leaves
47
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_55_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_55 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_55 | S1 | 30 | — | — |
| S1_65 | S1 | 6 | — | — |
| AA3_2 | AA | 6 | — | — |
| S1_61 | S1 | 6 | — | — |
| GT4 | GT | 4 | — | — |
| S1_27 | S1 | 3 | — | — |
| GH35 | GH | 3 | — | — |
| S1_8 | S1 | 3 | — | — |
| GH4 | GH | 3 | — | — |
| PL8 | PL | 2 | — | — |
| S1_46 | S1 | 2 | — | — |
| GH5_48 | GH | 2 | — | — |
| GH20 | GH | 2 | — | — |
| S1_26 | S1 | 2 | — | — |
| CE11 | CE | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_55_SSN.cys · 0.0 MB |
|---|---|
| Newick | s1_55_phylogeny.nwk |
| MUSCLE alignment | s1_55_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_55_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |