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Actinobacteriota PHYLUM
GTDB lineage: d__Bacteria;p__Actinobacteriota
19,989
CGCs
1,011
host MAGs
417
Distinct CAZyme and Sulfatase subfamilies
Overview
| GTDB rank | phylum |
|---|---|
| GTDB lineage | d__Bacteria;p__Actinobacteriota |
| Host MAGs (with ≥1 CGC) | 1,011 of 22,607 |
| CGCs in this group | 19,989 |
| Distinct CAZyme and Sulfatase subfamilies | 417 |
Sequence Similarity Network
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys. The bundled global x/y layout, node categories, and edge bitscores/e-values are all preloaded as attributes.
SCoNe co-occurrence
Top subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT4 | GT | 3,265 | — | — |
| GT2 | GT | 2,992 | — | — |
| GT119 | GT | 1,087 | — | — |
| GH3 | GH | 1,012 | — | — |
| GH1 | GH | 689 | — | — |
| CE14 | CE | 664 | — | — |
| GT51 | GT | 656 | — | — |
| GH13_30 | GH | 559 | — | — |
| GH15 | GH | 556 | — | — |
| GT28 | GT | 556 | — | — |
| S1_6 | S1 | 444 | — | — |
| GT1 | GT | 434 | — | — |
| S1_2 | S1 | 349 | — | — |
| GH23 | GH | 345 | — | — |
| CE1 | CE | 342 | — | — |
Downloads
| Full SSN (Cytoscape) | Actinobacteriota_SSN.cys · 322.7 MB |
|---|---|
| CGC list | cgcs.txt · 19,989 IDs |
| MAG list | mags.txt · 1,011 IDs |
| Ranked families | ranked_families.tsv · 417 families |