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GH130 GH GH family — see CAZy reference
88
target proteins
1,919
CGCs
999 / 88
tree leaves
269
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh130_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH130 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH130_1 | GH | 324 | — | — |
| GH92 | GH | 315 | — | — |
| GH130_9 | GH | 288 | — | — |
| GH130_8 | GH | 287 | — | — |
| GT4 | GT | 277 | — | — |
| GH130_2 | GH | 259 | — | — |
| GH26 | GH | 235 | — | — |
| GH130_3 | GH | 211 | — | — |
| GH130_4 | GH | 192 | — | — |
| GH130_6 | GH | 138 | — | — |
| CBM9 | CBM | 132 | — | — |
| GH20 | GH | 107 | — | — |
| GH5_7 | GH | 98 | — | — |
| GH29 | GH | 94 | — | — |
| GH130 | GH | 88 | — | — |
Downloads
| Full SSN (Cytoscape) | GH130_SSN.cys · 34.1 MB |
|---|---|
| Newick | gh130_phylogeny.max999.nwk |
| MUSCLE alignment | gh130_phylogeny.aln.faa |
| Target proteins (FASTA) | gh130_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |