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GH19 GH GH family — see CAZy reference
245
target proteins
422
CGCs
999 / 245
tree leaves
65
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh19_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH19 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH19 | GH | 245 | — | — |
| GH19_1 | GH | 117 | — | — |
| GH19_2 | GH | 65 | — | — |
| GH18 | GH | 44 | — | — |
| GH20 | GH | 8 | — | — |
| AA10 | AA | 8 | — | — |
| S1_15 | S1 | 7 | — | — |
| S1_9 | S1 | 6 | — | — |
| GT4 | GT | 6 | — | — |
| S1_6 | S1 | 5 | — | — |
| GH1 | GH | 5 | — | — |
| S1_7 | S1 | 4 | — | — |
| GT83 | GT | 4 | — | — |
| S1_4 | S1 | 3 | — | — |
| CBM9 | CBM | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH19_SSN.cys · 1.2 MB |
|---|---|
| Newick | gh19_phylogeny.max999.nwk |
| MUSCLE alignment | gh19_phylogeny.aln.faa |
| Target proteins (FASTA) | gh19_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |