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GH2_23 GH GH family — see CAZy reference
11
target proteins
11
CGCs
all
tree leaves
30
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_23_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_23 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_23 | GH | 11 | — | — |
| GH3 | GH | 9 | — | — |
| S1_15 | S1 | 7 | — | — |
| GH95 | GH | 7 | — | — |
| GH92 | GH | 6 | — | — |
| GH43_2 | GH | 5 | — | — |
| GH2_2 | GH | 3 | — | — |
| GH31_4 | GH | 3 | — | — |
| GH88 | GH | 2 | — | — |
| GH43_28 | GH | 2 | — | — |
| GH29 | GH | 2 | — | — |
| GH2_10 | GH | 2 | — | — |
| GH2_17 | GH | 2 | — | — |
| GH30_2 | GH | 2 | — | — |
| PL38 | PL | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_23_SSN.cys · 0.0 MB |
|---|---|
| Newick | gh2_23_phylogeny.nwk |
| MUSCLE alignment | gh2_23_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_23_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |